2018
Spiciarich DR, Oh ST, Foley A, Hughes SB, Mauro MJ, Abdel-Wahab O, Press RD, Viner R, Thompson SL, Chen Q, Azadi P, Bertozzi CR, Maxson JE. A Novel Germline Variant in CSF3R Reduces N-Glycosylation and Exerts Potent Oncogenic Effects in Leukemia. Cancer Res. 2018 Dec 15;78(24):6762-6770. doi: 10.1158/0008-5472.CAN-18-1638. Epub 2018 Oct 22. PubMed PMID: 30348809; PubMed Central PMCID: PMC6295230.
Qiu H, Shi S, Yue J, Xin M, Nairn AV, Lin L, Liu X, Li G, Archer-Hartmann SA, Dela Rosa M, Galizzi M, Wang S, Zhang F, Azadi P, van Kuppevelt TH, Cardoso WV, Kimata K, Ai X, Moremen KW, Esko JD, Linhardt RJ, Wang L. A mutant-cell library for systematic analysis of heparan sulfate structure-function relationships. Nat Methods. 2018 Nov;15(11):889-899. doi: 10.1038/s41592-018-0189-6. Epub 2018 Oct 30. PubMed PMID: 30377379; PubMed Central PMCID: PMC6214364.
Borges RM, Taujale R, de Souza JS, de Andrade Bezerra T, Silva ELE, Herzog R, Ponce FV, Wolfender JL, Edison AS. Dereplication of plant phenolics using a mass-spectrometry database independent method. Phytochem Anal. 2018 Nov;29(6):601-612. doi: 10.1002/pca.2773. Epub 2018 May 29. PubMed PMID: 29808582; PubMed Central PMCID: PMC8962509.
Zarnowski R, Sanchez H, Covelli AS, Dominguez E, Jaromin A, Bernhardt J, Mitchell KF, Heiss C, Azadi P, Mitchell A, Andes DR. Candida albicans biofilm-induced vesicles confer drug resistance through matrix biogenesis. PLoS Biol. 2018 Oct;16(10):e2006872. doi: 10.1371/journal.pbio.2006872. eCollection 2018 Oct. PubMed PMID: 30296253; PubMed Central PMCID: PMC6209495.
Chen H, Ambadapadi S, Wakefield D, Bartee M, Yaron JR, Zhang L, Archer-Hartmann SA, Azadi P, Burgin M, Borges C, Zheng D, Ergle K, Muppala V, Morshed S, Rand K, Clapp W, Proudfoot A, Lucas A. Selective Deletion of Heparan Sulfotransferase Enzyme, Ndst1, in Donor Endothelial and Myeloid Precursor Cells Significantly Decreases Acute Allograft Rejection. Sci Rep. 2018 Sep 7;8(1):13433. doi: 10.1038/s41598-018-31779-7. PubMed PMID: 30194334; PubMed Central PMCID: PMC6128922.
Zhang P, Lu H, Peixoto RT, Pines MK, Ge Y, Oku S, Siddiqui TJ, Xie Y, Wu W, Archer-Hartmann S, Yoshida K, Tanaka KF, Aricescu AR, Azadi P, Gordon MD, Sabatini BL, Wong ROL, Craig AM. Heparan Sulfate Organizes Neuronal Synapses through Neurexin Partnerships. Cell. 2018 Sep 6;174(6):1450-1464.e23. doi: 10.1016/j.cell.2018.07.002. Epub 2018 Aug 9. PubMed PMID: 30100184; PubMed Central PMCID: PMC6173057.
Byrne G, O’Rourke SM, Alexander DL, Yu B, Doran RC, Wright M, Chen Q, Azadi P, Berman PW. CRISPR/Cas9 gene editing for the creation of an MGAT1-deficient CHO cell line to control HIV-1 vaccine glycosylation. PLoS Biol. 2018 Aug;16(8):e2005817. doi: 10.1371/journal.pbio.2005817. eCollection 2018 Aug. PubMed PMID: 30157178; PubMed Central PMCID: PMC6133382.
Kang X, Kirui A, Muszyński A, Widanage MCD, Chen A, Azadi P, Wang P, Mentink-Vigier F, Wang T. Molecular architecture of fungal cell walls revealed by solid-state NMR. Nat Commun. 2018 Jul 16;9(1):2747. doi: 10.1038/s41467-018-05199-0. PubMed PMID: 30013106; PubMed Central PMCID: PMC6048167.
Guan N, Shin HD, Long L, Azadi P, Chen R. TCA cycle-powered synthesis of fucosylated oligosaccharides. Glycobiology. 2018 Jul 1;28(7):468-473. doi: 10.1093/glycob/cwy047. PubMed PMID: 29800149.
Pachekrepapol U, Lucey JA, Gong Y, Naran R, Azadi P. Corrigendum to “Characterization of the chemical structures and physical properties of exopolysaccharides produced by various Streptococcus thermophilus strains” (J. Dairy Sci. 100:3424-3435). J Dairy Sci. 2018 Jun;101(6):5668. doi: 10.3168/jds.2018-101-6-5668. PubMed PMID: 29779560.
Chen Y, Bensing BA, Seepersaud R, Mi W, Liao M, Jeffrey PD, Shajahan A, Sonon RN, Azadi P, Sullam PM, Rapoport TA. Unraveling the sequence of cytosolic reactions in the export of GspB adhesin from Streptococcus gordonii. J Biol Chem. 2018 Apr 6;293(14):5360-5373. doi: 10.1074/jbc.RA117.000963. Epub 2018 Feb 9. PubMed PMID: 29462788; PubMed Central PMCID: PMC5892584.
Muszyński A, Heiss C, Hjuler CT, Sullivan JT, Kelly SJ, Thygesen MB, Stougaard J, Azadi P, Carlson RW, Ronson CW. Structures of exopolysaccharides involved in receptor-mediated perception of Mesorhizobium loti by Lotus japonicas. J Biol Chem. 2018 Apr 6;293(14):5376. doi: 10.1074/jbc.AAC118.002877. PubMed PMID: 29626109; PubMed Central PMCID: PMC5892561.
Dominguez E, Zarnowski R, Sanchez H, Covelli AS, Westler WM, Azadi P, Nett J, Mitchell AP, Andes DR. Conservation and Divergence in the CandidaSpecies Biofilm Matrix Mannan-Glucan Complex Structure, Function, and Genetic Control. mBio. 2018 Apr 3;9(2). doi: 10.1128/mBio.00451-18. PubMed PMID: 29615504; PubMed Central PMCID: PMC5885036.
Flanagan-Steet H, Christian C, Lu PN, Aarnio-Peterson M, Sanman L, Archer-Hartmann S, Azadi P, Bogyo M, Steet RA. TGF-ß Regulates Cathepsin Activation during Normal and Pathogenic Development. Cell Rep. 2018 Mar 13;22(11):2964-2977. doi: 10.1016/j.celrep.2018.02.066. PubMed PMID: 29539424; PubMed Central PMCID: PMC6247414.
Shang-Guan K, Wang M, Htwe NMPS, Li P, Li Y, Qi F, Zhang D, Cao M, Kim C, Weng H, Cen H, Black IM, Azadi P, Carlson RW, Stacey G, Liang Y.Lipopolysaccharides Trigger Two Successive Bursts of Reactive Oxygen Species at Distinct Cellular Locations. Plant Physiol. 2018 Mar;176(3):2543-2556. doi: 10.1104/pp.17.01637. Epub 2018 Feb 5. PubMed PMID: 29431629; PubMed Central PMCID: PMC5841728
Blanco-Ulate B, Muszyński A, Figueroa-Balderas R, Morales-Cruz A, Azadi P, Dobruchowska JM, Castro C, Cantu D, Roper MC.Lipopolysaccharide O-antigen delays plant innate immune recognition of Xylella fastidiosa. Nat Commun. 2018 Jan 26;9(1):390. doi: 10.1038/s41467-018-02861-5. PubMed PMID: 29374171; PubMed Central PMCID: PMC5786101.
Tanigaki K, Sacharidou A, Peng J, Chambliss KL, Yuhanna IS, Ghosh D, Ahmed M, Szalai AJ, Vongpatanasin W, Mattrey RF, Chen Q, Azadi P, Lingvay I, Botto M, Holland WL, Kohler JJ, Sirsi SR, Hoyt K, Shaul PW, Mineo C. Hyposialylated IgG activates endothelial IgG receptor FcγRIIB to promote obesity-induced insulin resistance. J Clin Invest. 2018 Jan 2;128(1):309-322. doi: 10.1172/JCI89333. Epub 2017 Nov 27. PubMed PMID: 29202472; PubMed Central PMCID: PMC5749535.
Talabnin K, Talabnin C, Ishihara M, Azadi P. Increased expression of the high-mannose M6N2 and NeuAc3H3N3M3N2F tri-antennary N-glycans in cholangiocarcinoma. Oncol Lett. 2018 Jan;15(1):1030-1036. doi: 10.3892/ol.2017.7384. Epub 2017 Nov 9. PubMed PMID: 29399163; PubMed Central PMCID: PMC5772869.
Tatli M, Ishihara M, Heiss C, Browne D, Dangott L, Vitha S, Azadi P, Devarenne T. Polysaccharide associated protein (PSAP) from the green microalga Botryococcus braunii is a unique extracellular matrix hydroxyproline-rich glycoprotein. Algal research. 2018 January.
Kolinko S, Wu YW, Tachea F, Denzel E, Hiras J, Gabriel R, Bäcker N, Chan LJG, Eichorst SA, Frey D, Chen Q, Azadi P, Adams PD, Pray TR, Tanjore D, Petzold CJ, Gladden JM, Simmons BA, Singer SW. A bacterial pioneer produces cellulase complexes that persist through community succession. Nat Microbiol.2018 Jan;3(1):99-107. doi: 10.1038/s41564-017-0052-z. Epub 2017 Nov 6. PubMed PMID: 29109478; PubMed Central PMCID: PMC6794216.
2017
Amore A, Knott BC, Supekar NT, Shajahan A, Azadi P, Zhao P, Wells L, Linger JG, Hobdey SE, Vander Wall TA, Shollenberger T, Yarbrough JM, Tan Z, Crowley MF, Himmel ME, Decker SR, Beckham GT, Taylor LE 2nd. Distinct roles of N- and O-glycans in cellulase activity and stability. Proc Natl Acad Sci U S A. 2017 Dec 26;114(52):13667-13672. doi: 10.1073/pnas.1714249114. Epub 2017 Dec 11. PubMed PMID: 29229855; PubMed Central PMCID: PMC5748201.
Hamilton BS, Wilson JD, Shumakovich MA, Fisher AC, Brooks JC, Pontes A, Naran R, Heiss C, Gao C, Kardish R, Heimburg-Molinaro J, Azadi P, Cummings RD, Merritt JH, DeLisa MP. A library of chemically defined human N-glycans synthesized from microbial oligosaccharide precursors. Sci Rep. 2017 Nov 21;7(1):15907. doi: 10.1038/s41598-017-15891-8. PubMed PMID: 29162910; PubMed Central PMCID: PMC5698433.
Sheikh MO, Thieker D, Chalmers G, Schafer CM, Ishihara M, Azadi P, Woods RJ, Glushka JN, Bendiak B, Prestegard JH, West CM. O2 sensing-associated glycosylation exposes the F-box-combining site of the Dictyostelium Skp1 subunit in E3 ubiquitin ligases. J Biol Chem. 2017 Nov 17;292(46):18897-18915. doi: 10.1074/jbc.M117.809160. Epub 2017 Sep 19. PubMed PMID: 28928219; PubMed Central PMCID: PMC5704474.
Chen Y, Bensing B, Seepersaud R, Mi W, Liao M, Jeffrey P, Shajahan A, Sonon R, Azadi P, Sullam P, Rapoport T. Structure and function of accessory Sec proteins involved in the adhesion export pathway of Streptococcus gordonii. bioRxiv. 2017 November.
Shajahan A, Supekar NT, Heiss C, Ishihara M, Azadi P. Tool for Rapid Analysis of Glycopeptide by Permethylation via One-Pot Site Mapping and Glycan Analysis. Anal Chem. 2017 Oct 17;89(20):10734-10743. doi: 10.1021/acs.analchem.7b01730. Epub 2017 Oct 2. PubMed PMID: 28921966; PubMed Central PMCID: PMC5973789.
Matsuzaki C, Takagaki C, Tomabechi Y, Forsberg LS, Heiss C, Azadi P, Matsumoto K, Katoh T, Hosomi K, Kunisawa J, Yamamoto K, Hisa K. Structural characterization of the immunostimulatory exopolysaccharide produced by Leuconostoc mesenteroides strain NTM048. Carbohydr Res. 2017 Aug 7;448:95-102. doi: 10.1016/j.carres.2017.06.004. Epub 2017 Jun 15. PubMed PMID: 28633071.
Li Y, Fu J, Ling Y, Yago T, McDaniel JM, Song J, Bai X, Kondo Y, Qin Y, Hoover C, McGee S, Shao B, Liu Z, Sonon R, Azadi P, Marth JD, McEver RP, Ruan C, Xia L.Sialylation on O-glycans protects platelets from clearance by liver Kupffer cells. Proc Natl Acad Sci U S A. 2017 Aug 1;114(31):8360-8365. doi: 10.1073/pnas.1707662114. Epub 2017 Jul 17. PubMed PMID: 28716912; PubMed Central PMCID: PMC5547648.
Shajahan A, Heiss C, Ishihara M, Azadi P. Glycomic and glycoproteomic analysis of glycoproteins-a tutorial. Anal Bioanal Chem. 2017 Jul;409(19):4483-4505. doi: 10.1007/s00216-017-0406-7. Epub 2017 Jun 6. PubMed PMID: 28585084; PubMed Central PMCID: PMC5498624.
Lowery CL 3rd, Elliott C, Cooper A, Hadden C, Sonon RN, Azadi P, Williams DK, Marsh JD, Woulfe DS, Kilic F. Cigarette Smoking-Associated Alterations in Serotonin/Adrenalin Signaling Pathways of Platelets. J Am Heart Assoc. 2017 May 18;6(5). doi: 10.1161/JAHA.116.005465. PubMed PMID: 28522678; PubMed Central PMCID: PMC5524091.
Pachekrepapol U, Lucey JA, Gong Y, Naran R, Azadi P. Characterization of the chemical structures and physical properties of exopolysaccharides produced by various Streptococcus thermophilus strains. J Dairy Sci. 2017 May;100(5):3424-3435. doi: 10.3168/jds.2016-12125. Epub 2017 Mar 16. PubMed PMID: 28318581.
Zhou Y, Badgett MJ, Billard L, Bowen JH, Orlando R, Willis JH. Properties of the cuticular proteins of Anopheles gambiae as revealed by serial extraction of adults. PLoS One. 2017;12(4):e0175423. doi: 10.1371/journal.pone.0175423. eCollection 2017. PubMed PMID: 28419115; PubMed Central PMCID: PMC5395146.
Woo CM, Felix A, Byrd WE, Zuegel DK, Ishihara M, Azadi P, Iavarone AT, Pitteri SJ, Bertozzi CR. Development of IsoTaG, a Chemical Glycoproteomics Technique for Profiling Intact N- and O-Glycopeptides from Whole Cell Proteomes. J Proteome Res. 2017 Apr 7;16(4):1706-1718. doi: 10.1021/acs.jproteome.6b01053. Epub 2017 Feb 28. PubMed PMID: 28244757; PubMed Central PMCID: PMC5507588.
Kintz E, Heiss C, Black I, Donohue N, Brown N, Davies MR, Azadi P, Baker S, Kaye PM, van der Woude M. Salmonella enterica Serovar Typhi Lipopolysaccharide O-Antigen Modification Impact on Serum Resistance and Antibody Recognition. Infect Immun. 2017 Apr;85(4). doi: 10.1128/IAI.01021-16. Print 2017 Apr. PubMed PMID: 28167670; PubMed Central PMCID: PMC5364305.
2016
Starr KF, Porsch EA, Seed PC, Heiss C, Naran R, Forsberg LS, Amit U, Yagupsky P, Azadi P, St Geme JW 3rd. Kingella kingae Expresses Four Structurally Distinct Polysaccharide Capsules That Differ in Their Correlation with Invasive Disease. PLoS Pathog. 2016 Oct;12(10):e1005944. doi: 10.1371/journal.ppat.1005944. eCollection 2016 Oct. PubMed PMID: 27760194; PubMed Central PMCID: PMC5070880.
Edgar RJ, Chen J, Kant S, Rechkina E, Rush JS, Forsberg LS, Jaehrig B, Azadi P, Tchesnokova V, Sokurenko EV, Zhu H, Korotkov KV, Pancholi V, Korotkova N.SpyB, a Small Heme-Binding Protein, Affects the Composition of the Cell Wall in Streptococcus pyogenes. Front Cell Infect Microbiol. 2016;6:126. doi: 10.3389/fcimb.2016.00126. eCollection 2016. PubMed PMID: 27790410; PubMed Central PMCID: PMC5061733.
Alcántara MÁ, Dobruchowska J, Azadi P, García BD, Molina-Heredia FP, Reyes-Sosa FM. Recalcitrant carbohydrates after enzymatic hydrolysis of pretreated lignocellulosic biomass. Biotechnol Biofuels. 2016;9:207. doi: 10.1186/s13068-016-0629-4. eCollection 2016. PubMed PMID: 27713766; PubMed Central PMCID: PMC5052873.
Zong C, Huang R, Condac E, Chiu Y, Xiao W, Li X, Lu W, Ishihara M, Wang S, Ramiah A, Stickney M, Azadi P, Amster IJ, Moremen KW, Wang L, Sharp JS, Boons GJ. Integrated Approach to Identify Heparan Sulfate Ligand Requirements of Robo1. J Am Chem Soc. 2016 Oct 5;138(39):13059-13067. doi: 10.1021/jacs.6b08161. Epub 2016 Sep 27. PubMed PMID: 27611601; PubMed Central PMCID: PMC5068570.
Muszyński A, Heiss C, Hjuler CT, Sullivan JT, Kelly SJ, Thygesen MB, Stougaard J, Azadi P, Carlson RW, Ronson CW. Structures of Exopolysaccharides Involved in Receptor-mediated Perception of Mesorhizobium loti by Lotus japonicus. J Biol Chem. 2016 Sep 30;291(40):20946-20961. doi: 10.1074/jbc.M116.743856. Epub 2016 Aug 8. PubMed PMID: 27502279; PubMed Central PMCID: PMC5076507.
Mehta N, Porterfield M, Struwe WB, Heiss C, Azadi P, Rudd PM, Tiemeyer M, Aoki K. Mass Spectrometric Quantification of N-Linked Glycans by Reference to Exogenous Standards. J Proteome Res. 2016 Sep 2;15(9):2969-80. doi: 10.1021/acs.jproteome.6b00132. Epub 2016 Aug 5. PubMed PMID: 27432553; PubMed Central PMCID: PMC5501980.
Spears PA, Havell EA, Hamrick TS, Goforth JB, Levine AL, Abraham ST, Heiss C, Azadi P, Orndorff PE. Listeria monocytogenes wall teichoic acid decoration in virulence and cell-to-cell spread. Mol Microbiol. 2016 Sep;101(5):714-30. doi: 10.1111/mmi.13353. Epub 2016 Mar 10. PubMed PMID: 26871418.
Chen L, Valentine JL, Huang CJ, Endicott CE, Moeller TD, Rasmussen JA, Fletcher JR, Boll JM, Rosenthal JA, Dobruchowska J, Wang Z, Heiss C, Azadi P, Putnam D, Trent MS, Jones BD, DeLisa MP. Outer membrane vesicles displaying engineered glycotopes elicit protective antibodies. Proc Natl Acad Sci U S A. 2016 Jun 28;113(26):E3609-18. doi: 10.1073/pnas.1518311113. Epub 2016 Jun 6. PubMed PMID: 27274048; PubMed Central PMCID: PMC4932928.
Valentine JL, Chen L, Perregaux EC, Weyant KB, Rosenthal JA, Heiss C, Azadi P, Fisher AC, Putnam D, Moe GR, Merritt JH, DeLisa MP. Immunization with Outer Membrane Vesicles Displaying Designer Glycotopes Yields Class-Switched, Glycan-Specific Antibodies. Cell Chem Biol. 2016 Jun 23;23(6):655-65. doi: 10.1016/j.chembiol.2016.05.014. PubMed PMID: 27341433; PubMed Central PMCID: PMC5116915.
Ito H, Kaji H, Togayachi A, Azadi P, Ishihara M, Geyer R, Galuska C, Geyer H, Kakehi K, Kinoshita M, Karlsson NG, Jin C, Kato K, Yagi H, Kondo S, Kawasaki N, Hashii N, Kolarich D, Stavenhagen K, Packer NH, Thaysen-Andersen M, Nakano M, Taniguchi N, Kurimoto A, Wada Y, Tajiri M, Yang P, Cao W, Li H, Rudd PM, Narimatsu H. Comparison of analytical methods for profiling N- and O-linked glycans from cultured cell lines : HUPO Human Disease Glycomics/Proteome Initiative multi-institutional study. Glycoconj J. 2016 Jun;33(3):405-415. doi: 10.1007/s10719-015-9625-3. Epub 2015 Oct 28. PubMed PMID: 26511985; PubMed Central PMCID: PMC4848167.
Ma L, Chen Z, Huang da W, Kutty G, Ishihara M, Wang H, Abouelleil A, Bishop L, Davey E, Deng R, Deng X, Fan L, Fantoni G, Fitzgerald M, Gogineni E, Goldberg JM, Handley G, Hu X, Huber C, Jiao X, Jones K, Levin JZ, Liu Y, Macdonald P, Melnikov A, Raley C, Sassi M, Sherman BT, Song X, Sykes S, Tran B, Walsh L, Xia Y, Yang J, Young S, Zeng Q, Zheng X, Stephens R, Nusbaum C, Birren BW, Azadi P, Lempicki RA, Cuomo CA, Kovacs JA. Genome analysis of three Pneumocystis species reveals adaptation mechanisms to life exclusively in mammalian hosts. Nat Commun. 2016 Feb 22;7:10740. doi: 10.1038/ncomms10740. PubMed PMID: 26899007; PubMed Central PMCID: PMC4764891.
Heiss C, Wang Z, Black I, Azadi P, Fichorova RN, Singh BN. Novel structural features of the immunocompetent ceramide phospho-inositol glycan core from Trichomonas vaginalis. Carbohydr Res. 2016 Jan;419:51-9. doi: 10.1016/j.carres.2015.11.001. Epub 2015 Nov 10. PubMed PMID: 26671321; PubMed Central PMCID: PMC4698206.
Azadi P, Heiss C. Structural Analysis of Glycosaminoglycans – An Indispensable Tool for the Diagnosis, Treatment and Prevention of Human Disease. In:Glycobiology and Human Diseases Boca Raton, Florida: CRC Press; 2016. Chapter 2; p.28-64. 323p.
Talabnin K, Talabnin C, Ishihara M, Azadi P, Wongkham S, Sripa B. Differential Expression of O-glycoprotein Glycans in Cholangiocarcinoma Cell Lines. Asian Pac J Cancer Prev. 2016;17(2):691-5. doi: 10.7314/apjcp.2016.17.2.691. PubMed PMID: 26925665; PubMed Central PMCID: PMC4809418.
Porfírio S, Gomes da Silva MDR, Peixe A, Cabrita MJ, Azadi P. Current analytical methods for plant auxin quantification–A review. Anal Chim Acta. 2016 Jan 1;902:8-21. doi: 10.1016/j.aca.2015.10.035. Epub 2015 Nov 6. Review. PubMed PMID: 26703249.